Rice Chromosome chr1 chr1 chr1 chr1 chr1 chr1 chr1 chr1 chr1 chr1 chr2 chr2 chr2 chr2 chr2 chr2 chr2 chr2 chr2 chr2 chr3 chr3 chr3 chr3 chr3 chr3 chr3 chr3 chr3 chr3 chr4 chr4 chr4 chr4 chr4 chr4 chr4 chr4 chr4 chr4 chr5 chr5 chr5 chr5 chr5 chr5 chr5 chr5 chr5 chr5 chr6 chr6 chr6 chr6 chr6 chr6 chr6 chr6 chr6 chr6 chr7 chr7 chr7 chr7 chr7 chr7 chr7 chr7 chr7 chr7 chr8 chr8 chr8 chr8 chr8 chr8 chr8 chr8 chr8 chr8 chr9 chr9 chr9 chr9 chr9 chr9 chr9 chr9 chr9 chr9 chr10 chr10 chr10 chr10 chr10 chr10 chr10 chr10 chr10 chr10 chr11 chr11 chr11 chr11 chr11 chr11 chr11 chr11 chr11 chr11 chr12 chr12 chr12 chr12 chr12 chr12 chr12 chr12 chr12 chr12 chrM chrC
RiceMap Version 2 Beta online!

japonica >> Browse japonica genome
Input format: (1)chr:start-end, like chr2:175000-196000. (2)chr:start+length, like chr2:175000+21000. (3)gene ID, like LOC_Os08g39890. (4)function description, like SBP-box gene family member.
  
indica >> Browse indica genome
Input format: (1)chr:start-end, like chr2:175000-196000. (2)chr:start+length, like chr2:175000+21000. (3)gene ID, like BGIOSIBCE028446. (4)function description, like TBC domain.
  

What's New in Rice-Map

  • >> October 2012 - New version of Rice-Map will come soon.
  • >> May 2012 - A live demo of Rice-Map is available here.
  • >> February 2011 - The source code of Rice-Map is publicly accessible at download page for free downloading.
  • >> December 2010 - Expression data and Sequencing data of the two subspecies are imported into Rice Mart.
  • >> December 2010 - mRNA sequencing, smRNA sequencing and ChIP-Seq methylation data of the two subspecies are imported into genome browser.
  • >> November 2010 - Expression data Rice expression atlas: Plant reproductive process of japonica, Dissecting the developmental transcriptomes of rice of indica are imported into genome browser.
  • More ...

Please Cite

Jun Wang*, Lei Kong*, Shuqi Zhao, He Zhang, Liang Tang, Zhe Li, Xiaocheng Gu, Jingchu Luo#, Ge Gao#.
Rice-Map: a new-generation rice genome browser. BMC Genomics 2011, 12:165.  [Full Text]

Poster in ISMB/ECCB 2011 Conference: Rice-Map: A new generation rice genome browser

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