Download source code:
Rice-Map's whole source code is released as "Free Software" under the GNU General Public License version 3 (GPLv3), and freely available for downloading.
download source code Rice-Map source code v1.0
Download user-supplied data:
* Download japonica public comments
* Download indica public comments
* Download japonica public annotations
* Download indica public annotations
Download japonica annotations:

Affymetrix GeneChip Rice Genome Array
Agilent Rice Oligo Microarray
Anther development
Anther development (Agilent data)
Arabidopsis PlantGDB PUTs
Avena sativa PlantGDB PUTs
Best Arabidopsis Hit
Best indica HIT
Best Sorghum Hit
BLASTP Hits
Brachypodium distachyon mRNA
Brachypodium distachyon PlantGDB PUTs
CSRDB smRNAs
Early embryogenesis
Epigenetics modification (shoots of four-leaf stage seedlings of japonica)
Festuca arundinacea PlantGDB PUTs
GeneMarkHMM Predictions
GlimmerHMM Predictions
Gramene QTL
Hordeum vulgare PlantGDB PUTs
IRGSP V5 Pseudomolecules Alignment
japonica EST
japonica-japonica ColinearGene
japonica-indica ColinearGene
japonica mRNA
japonica Transcription Factor
Long Noncoding RNA
Maize Genetic Markers
Maize PlantGDB PUTs
miRBase Oryza miRNAs
MPSS Tags
MSU Osa1 Pseudomolecules vs BGI Pseudomolecules
MSU Osa1 Pseudomolecules vs BGI Pseudomolecules SNPs
MSU Osa1 Rice Gene Models
MSU Osa1 Rice Loci
Noncoding RNAs
NSF 20k Rice Oligo Microarray
NSF 45k Rice Oligo Microarray
Organellar Insertions
Orthologous Groups
Oryza BAC End Alignments
Oryza Repeats
Oryza_sativa-Sorghum_bicolor-Brachypodium_distachyon MAF
Oryza_sativa-Sorghum_bicolor-Brachypodium_distachyon MAF with GAP
Oryza Swissprot
Pack MULES MSU
Panicum virgatum PlantGDB PUTs
PhastCons
Pollination Fertilization
RAP Loci
RGP All Annotatied Results
RGP Predicted Geneset
Rice FL-cDNA
Rice PlantGDB PUTs
Rice SSR Markers Gramene
Rice SSR Markers putative
RNA-seq (shoots of four-leaf stage seedlings of japonica)
Saccharum officinarum PlantGDB PUTs
SAGE Tags
Secale cereale PlantGDB PUTs
small RNAs (shoots of four-leaf stage seedlings of japonica)
Sorghum bicolor Gene Models
Sorghum bicolor mRNA
Sorghum bicolor PlantGDB PUTs
Sorghum propinquum PlantGDB PUTs
tRNA Predictions
Triticum aestivum PlantGDB PUTs
Triticum monococcum PlantGDB PUTs
Triticum turgidum subsp durum PlantGDB PUTs
Uniprot Plants
Vegetative tissues
VISTA Plot: Arabidopsis
VISTA Plot: Brachypodium distachyon
VISTA Plot: Cucumis sativus
VISTA Plot: Maize
VISTA Plot: Mimulus guttatus
VISTA Plot: Poplar
VISTA Plot: Sorghum
VISTA Plot: Soybean
VISTA Plot: Wine grape
Wheat Mapped Markers
Download indica annotations:

Affymetrix GeneChip Rice Genome Array
Agilent Rice Oligo Microarray
Arabidopsis PlantGDB PUTs
Avena sativa PlantGDB PUTs
Best Arabidopsis Hit
Best japonica HIT
Best Sorghum Hit
BGF
BGI Pseudomolecules vs MSU Osa1 Pseudomolecules
BGI Pseudomolecules vs MSU Osa1 Pseudomolecules SNPs
BGI Repeat
BLASTP Hits
Brachypodium distachyon PlantGDB PUTs
Callus Minghui 63
CSRDB smRNAs
Endosperm Minghui 63
Epigenetics modification (shoots of four-leaf stage seedlings of indica)
Festuca arundinacea PlantGDB PUTs
FgeneSH
GeneMarkHMM Predictions
Germinating seed Minghui 63
GLEAN
GlimmerHMM Predictions
Hordeum vulgare PlantGDB PUTs
IRGSP V5 Pseudomolecules Alignment
indica EST
indica-indica ColinearGene
indica-japonica ColinearGene
indica mRNA
indica Transcription Factor
Leaf Minghui 63
Long Noncoding RNA
Maize Genetic Markers
Maize PlantGDB PUTs
miRBase Oryza miRNAs
miRNA
MPSS Tags
Noncoding RNAs
NSF 20k Rice Oligo Microarray
NSF 45k Rice Oligo Microarray
Organellar Insertions
Orthologous Groups
Oryza BAC End Alignments
Oryza Repeats
Oryza Swissprot
Pack MULES MSU
Palea/lemma Minghui 63
Panicle Minghui 63
Panicum virgatum PlantGDB PUTs
Plumule Minghui 63
Radicle Minghui 63
RAP Loci
RGP All Annotatied Results
RGP Predicted Geneset
Rice FL-cDNA
Rice PlantGDB PUTs
Rice SSR Markers Gramene
Rice SSR Markers putative
RNA-seq (shoots of four-leaf stage seedlings of indica)
Root Minghui 63
rRNA
Saccharum officinarum PlantGDB PUTs
SAGE Tags
Secale cereale PlantGDB PUTs
Seedling Minghui 63
Sheath Minghui 63
Shoot Minghui 63
small RNAs (shoots of four-leaf stage seedlings of indica)
snRNA
Sorghum bicolor Gene Models
Sorghum bicolor PlantGDB PUTs
Sorghum propinquum PlantGDB PUTs
Spikelet Minghui 63
sRNA
Stamen Minghui 63
Stem Minghui 63
tRNA
Triticum aestivum PlantGDB PUTs
Triticum monococcum PlantGDB PUTs
Triticum turgidum subsp durum PlantGDB PUTs
Uniprot Plants
Wheat Mapped Markers